content stringlengths 22 815k | id int64 0 4.91M |
|---|---|
def _makeSSDF(row, minEvents):
"""
Function to change form of TRDF for subpace creation
"""
index = range(len(row.Clust))
columns = [x for x in row.index if x != 'Clust']
DF = pd.DataFrame(index=index, columns=columns)
DF['Name'] = ['SS%d' % x for x in range(len(DF))] # name subspaces
#... | 1,800 |
def save_checkpoint(logdir, epoch, global_step, model, optimizer):
"""Saves the training state into the given log dir path."""
checkpoint_file_name = os.path.join(logdir, 'step-%03dK.pth' % (global_step // 1000))
print("saving the checkpoint file '%s'..." % checkpoint_file_name)
checkpoint = {
'... | 1,801 |
def concatenate_constraints(original_set, additional_set):
"""
Method for concatenating sets of linear constraints.
original_set and additional_set are both tuples of
for (C, b, n_eq). Output is a concatenated tuple of
same form.
All equality constraints are always kept on top.
"""
C... | 1,802 |
def _isDefaultHandler():
"""
Determine whether the I{SIGCHLD} handler is the default or not.
"""
return signal.getsignal(signal.SIGCHLD) == signal.SIG_DFL | 1,803 |
def downsampling(conversion_rate,data,fs):
"""
ダウンサンプリングを行う．
入力として，変換レートとデータとサンプリング周波数．
アップサンプリング後のデータとサンプリング周波数を返す．
"""
# 間引くサンプル数を決める
decimationSampleNum = conversion_rate-1
# FIRフィルタの用意をする
nyqF = (fs/conversion_rate)/2.0 # 変換後のナイキスト周波数
cF = (fs/conversion_rate/2.0... | 1,804 |
def get_client_cache_key(
request_or_attempt: Union[HttpRequest, AccessBase], credentials: dict = None
) -> str:
"""
Build cache key name from request or AccessAttempt object.
:param request_or_attempt: HttpRequest or AccessAttempt object
:param credentials: credentials containing user information
... | 1,805 |
def test_empty_schema() -> None:
"""Test that SchemaModel supports empty schemas."""
empty_schema = pa.DataFrameSchema()
class EmptySchema(pa.SchemaModel):
pass
assert empty_schema == EmptySchema.to_schema()
class Schema(pa.SchemaModel):
a: Series[int]
class EmptySubSchema(S... | 1,806 |
def loadMaterials(matFile):
"""
Loads materials into Tom's code from external file of all applicable materials.
These are returned as a dictionary.
"""
mats = {}
name, no, ne, lto, lte, mtype = np.loadtxt(matFile, dtype=np.str, unpack=True)
no = np.array(list(map(np.float, no)))
... | 1,807 |
def prepend_with_baseurl(files, base_url):
"""prepend url to beginning of each file
Parameters
------
files (list): list of files
base_url (str): base url
Returns
------
list: a list of files with base url pre-pended
"""
return [base_url + file for file in files] | 1,808 |
def streamplot(
x,
y,
u,
v,
p=None,
density=1,
color="#1f77b4",
line_width=None,
alpha=1,
arrow_size=7,
min_length=0.1,
start_points=None,
max_length=4.0,
integration_direction="both",
arrow_level="underlay",
**kwargs,
):
"""Draws streamlines of a vect... | 1,809 |
def wait_for_workspace_to_start(self, *, workspace_pk):
"""Checks if the workspace is up for up to 10 minutes."""
workspace = Workspace.objects.get(pk=workspace_pk)
if workspace.status != WorkspaceStatus.PENDING:
# Nothing to do
return
with requests.Session() as s:
_authorise(c... | 1,810 |
def _loc(df, start, stop, include_right_boundary=True):
"""
>>> df = pd.DataFrame({'x': [10, 20, 30, 40, 50]}, index=[1, 2, 2, 3, 4])
>>> _loc(df, 2, None)
x
2 20
2 30
3 40
4 50
>>> _loc(df, 1, 3)
x
1 10
2 20
2 30
3 40
>>> _loc(df, 1, 3, inclu... | 1,811 |
def test_legacy_yaml(tmpdir, install_mockery, mock_packages):
"""Tests a simple legacy YAML with a dependency and ensures spec survives
concretization."""
yaml = """
spec:
- a:
version: '2.0'
arch:
platform: linux
platform_os: rhel7
target: x86_64
compiler:
name: gcc
... | 1,812 |
def compare_system_and_attributes_faulty_systems(self):
"""compare systems and associated attributes"""
# compare - systems / attributes
self.assertTrue(System.objects.filter(system_name='system_csv_31_001').exists())
self.assertTrue(System.objects.filter(system_name='system_csv_31_003').exists())
... | 1,813 |
def editPostgresConf():
"""
edit /var/lib/pgsql/data/postgresql.conf and change max_connections to 150
"""
try:
tempFile = tempfile.mktemp(dir="/tmp")
logging.debug("copying %s over %s", basedefs.FILE_PSQL_CONF, tempFile)
shutil.copy2(basedefs.FILE_PSQL_CONF, tempFile)
... | 1,814 |
def get_regions(contig,enzymes):
"""return loci with start and end locations"""
out_sites = []
enz_1 = [enz for enz in Restriction.AllEnzymes if "%s"%enz == enzymes[0]][0]
enz_2 = [enz for enz in Restriction.AllEnzymes if "%s"%enz == enzymes[1]][0]
enz_1_sites = enz_1.search(contig.seq)
enz_2_si... | 1,815 |
def getHighContrast(j17, j18, d17, d18):
"""
contrast enhancement through stacking
"""
summer = j17 + j18
summer = summer / np.amax(summer)
winter = d17 + d18
winter = winter / np.amax(winter)
diff = winter * summer
return diff | 1,816 |
def get_bounding_box(dataframe, dataIdentifier):
"""Returns the rectangle in a format (min_lat, max_lat, min_lon, max_lon)
which bounds all the points of the ´dataframe´.
Parameters
----------
dataframe : pandas.DataFrame
the dataframe with the data
dataIdentifier : DataIdentifier
... | 1,817 |
def get_file_download_response(dbfile):
"""
Create the HttpResponse for serving a file.
The file is not read our output - instead, by setting `X-Accel-Redirect`-
header, the web server (nginx) directly serves the file.
"""
mimetype = dbfile.mimeType
response = HttpResponse(content_type=mim... | 1,818 |
def keyWait():
"""Waits until the user presses a key.
Then returns a L{KeyDown} event.
Key events will repeat if held down.
A click to close the window will be converted into an Alt+F4 KeyDown event.
@rtype: L{KeyDown}
"""
while 1:
for event in get():
if ev... | 1,819 |
def create_project(
org_id: str,
api_key: str,
url: str,
label_type: LabelType,
taxonomy: str = "DEFAULT::Berkeley Deep Drive (BDD)",
reviews: int = 1,
) -> Generator[Tuple[str, RBProject], None, None]:
"""Create project."""
profile = datetime.strftime(datetime.now(), "%Y%m%d%H%M%S%f") +... | 1,820 |
def create_comentarios_instancia(id_instancia):
"""
@retorna un ok en caso de que se halla ejecutado la operacion
@except status 500 en caso de presentar algun error
"""
from datetime import datetime
if request.method == 'POST':
try:
values = json.loads( request.data.decode('8859') )
mensaje = val... | 1,821 |
def callEvalGen(args: argparse.Namespace):
"""
Method for evaluation of the keywords generation task on the Inspec dataset.
:param args: User arguments.
:type args: argparse.Namespace
"""
return evalOn(args, "uncontr") | 1,822 |
async def osfrog(msg, mobj):
"""
Patch 7.02: help string was removed from Captain's Mode
"""
osfrogs = [
"Added Monkey King to the game",
"Reduced Lone Druid's respawn talent -50s to -40s",
]
return await client.send_message(mobj.channel, choice(osfrogs)) | 1,823 |
def _add_normalizing_vector_point(mesh, minpt, maxpt):
"""
This function allows you to visualize all meshes in their size relative to each other
It is a quick simple hack: by adding 2 vector points at the same x coordinates at the
extreme left and extreme right of the largest .stl mesh, all the meshes a... | 1,824 |
def run():
""" function to start flask apps"""
host = os.getenv("HOST") or '127.0.0.1'
app.run(host=host) | 1,825 |
def radii_ratio(collection):
"""
The Flaherty & Crumplin (1992) index, OS_3 in Altman (1998).
The ratio of the radius of the equi-areal circle to the radius of the MBC
"""
ga = _cast(collection)
r_eac = numpy.sqrt(pygeos.area(ga) / numpy.pi)
r_mbc = pygeos.minimum_bounding_radius(ga)
re... | 1,826 |
def create_jwt(project_id, private_key_file, algorithm):
"""Create a JWT (https://jwt.io) to establish an MQTT connection."""
token = {
'iat': datetime.datetime.utcnow(),
'exp': datetime.datetime.utcnow() + datetime.timedelta(minutes=60),
'aud': project_id
}
with open(private_key... | 1,827 |
def update_analytics(node, file, version_idx, action='download'):
"""
:param Node node: Root node to update
:param str file_id: The _id field of a filenode
:param int version_idx: Zero-based version index
:param str action: is this logged as download or a view
"""
# Pass in contributors and ... | 1,828 |
def games(engine1, engine2, number_of_games):
"""Let engine1 and engine2 play several games against each other.
Each begin every second game."""
engine1_wins = 0
engine2_wins = 0
draws = 0
for n in range(number_of_games):
if n % 2:
result = game(engine1, engine2, True)
... | 1,829 |
def tissue2line(data, line=None):
"""tissue2line
Project tissue probability maps to the line by calculating the probability of each tissue type in each voxel of the 16x720 beam and then average these to get a 1x720 line. Discrete tissues are assigned by means of the highest probability of a particular tissue t... | 1,830 |
def get_version(pyngrok_config=None):
"""
Get a tuple with the ``ngrok`` and ``pyngrok`` versions.
:param pyngrok_config: A ``pyngrok`` configuration to use when interacting with the ``ngrok`` binary,
overriding :func:`~pyngrok.conf.get_default()`.
:type pyngrok_config: PyngrokConfig, optional
... | 1,831 |
def stat_cleaner(stat: str) -> int:
"""Cleans and converts single stat.
Used for the tweets, followers, following, and likes count sections.
Args:
stat: Stat to be cleaned.
Returns:
A stat with commas removed and converted to int.
"""
return int(stat.replace(",", "")) | 1,832 |
def load_image_ids(img_root, split_dir):
"""images in the same directory are in the same split"""
pathXid = []
img_root = os.path.join(img_root, split_dir)
for name in os.listdir(img_root):
idx = name.split(".")[0]
pathXid.append(
(
os.path.join(img_ro... | 1,833 |
def do(ARGV):
"""Allow to check whether the exception handlers are all in place.
"""
if len(ARGV) != 3: return False
elif ARGV[1] != "<<TEST:Exceptions/function>>" \
and ARGV[1] != "<<TEST:Exceptions/on-import>>": return False
if len(ARGV) < 3: return False
exception = A... | 1,834 |
def get_available_language_packs():
"""Get list of registered language packs.
:return list:
"""
ensure_autodiscover()
return [val for (key, val) in registry.registry.items()] | 1,835 |
def _plot_topo_onpick(event, show_func=None, colorbar=False):
"""Onpick callback that shows a single channel in a new figure"""
# make sure that the swipe gesture in OS-X doesn't open many figures
orig_ax = event.inaxes
if event.inaxes is None:
return
import matplotlib.pyplot as plt
tr... | 1,836 |
def topo_star(jd_tt, delta_t, star, position, accuracy=0):
"""
Computes the topocentric place of a star at 'date', given its
catalog mean place, proper motion, parallax, and radial velocity.
Parameters
----------
jd_tt : float
TT Julian date for topocentric place.
delta_t : float
... | 1,837 |
def py_multiplicative_inverse(a, n):
"""Multiplicative inverse of a modulo n (in Python).
Implements extended Euclidean algorithm.
Args:
a: int-like np.ndarray.
n: int.
Returns:
Multiplicative inverse as an int32 np.ndarray with same shape as a.
"""
batched_a = n... | 1,838 |
def _get_simconffile(args):
"""
Get experiment config file name from command line
"""
logger = logging.getLogger('fms')
try:
simconffile = args[1]
except IndexError:
logger.critical("Missing simulation config file name.")
sys.exit(2)
return simconffile | 1,839 |
def resample_nearest_neighbour(input_tif, extents, new_res, output_file):
"""
Nearest neighbor resampling and cropping of an image.
:param str input_tif: input geotiff file path
:param list extents: new extents for cropping
:param float new_res: new resolution for resampling
:param str output_f... | 1,840 |
def test_al_validation_third_digit_corresponds_to_type_of_company():
"""Test if invalid when the third digit is different to 0_3_5_7_8"""
invalid_number = '172030964'
assert al.start(invalid_number) == False | 1,841 |
def AptInstall(vm):
"""Installs the Mellanox OpenFabrics driver on the VM."""
_Install(vm) | 1,842 |
def harvester_api_info(request, name):
"""
This function returns the pretty rendered
api help text of an harvester.
"""
harvester = get_object_or_404(Harvester, name=name)
api = InitHarvester(harvester).get_harvester_api()
response = api.api_infotext()
content = response.data[harvester.n... | 1,843 |
def init_db():
"""Open SQLite database, create facebook table, return connection."""
db = sqlite3.connect('facebook.sql')
cur = db.cursor()
cur.execute(SQL_CREATE)
db.commit()
cur.execute(SQL_CHECK)
parse = list(cur.fetchall())[0][0] == 0
return db, cur, parse | 1,844 |
def prime_gen():
"""Returns prime based on 172 bit range. Results is 44 char"""
x = subprocess.run(
['openssl', 'prime', '-generate', '-bits', '172', '-hex'],
stdout=subprocess.PIPE)
return x.stdout[:-1] | 1,845 |
def aggregate_gradients_using_copy_with_variable_colocation(
tower_grads, use_mean, check_inf_nan):
"""Aggregate gradients, colocating computation with the gradient's variable.
Args:
tower_grads: List of lists of (gradient, variable) tuples. The outer list
is over towers. The inner list is over indiv... | 1,846 |
def module_for_category( category ):
"""Return the OpenGL.GL.x module for the given category name"""
if category.startswith( 'VERSION_' ):
name = 'OpenGL.GL'
else:
owner,name = category.split( '_',1)
if owner.startswith( '3' ):
owner = owner[1:]
name = 'OpenGL.GL.... | 1,847 |
def check_file_location(file_path, function, file_ext='', exists=False):
"""Function to check whether a file exists and has the correct file extension"""
folder, file, ext = '', '', ''
if file_path == '':
exit_prompt('Error: Could not parse path to {} file'.format(function))
try:
f... | 1,848 |
def timestamp() -> str:
"""generate formatted timestamp for the invocation moment"""
return dt.now().strftime("%d-%m-%Y %H:%M:%S") | 1,849 |
def test_serder():
"""
Test the support functionality for Serder key event serialization deserialization
"""
with pytest.raises(ValueError):
serder = Serder()
e1 = dict(vs=Vstrings.json, pre="ABCDEFG", sn="0001", ilk="rot")
serder = Serder(ked=e1)
assert serder.ked == e1
assert ... | 1,850 |
def sde(trains, events=None, start=0 * pq.ms, stop=None,
kernel_size=100 * pq.ms, optimize_steps=0,
minimum_kernel=10 * pq.ms, maximum_kernel=500 * pq.ms,
kernel=None, time_unit=pq.ms, progress=None):
""" Create a spike density estimation plot.
The spike density estimations give an esti... | 1,851 |
def content(obj):
"""Strip HTML tags for list display."""
return strip_tags(obj.content.replace('</', ' </')) | 1,852 |
def main():
"""
main()
"""
action = get_cmd_param(1)
if action == 'soup':
keyword = get_cmd_param(
2, 'https://tw.news.appledaily.com/local/realtime/20181025/1453825')
soup(keyword)
elif action == 'search':
keyword = get_cmd_param(2, '酒駕')
channel = ge... | 1,853 |
def flux(Q, N, ne, Ap, Am):
"""
calculates the flux between two boundary sides of
connected elements for element i
"""
# for every element we have 2 faces to other elements (left and right)
out = np.zeros((ne, N + 1, 2))
# Calculate Fluxes inside domain
for i in range(1, ne - 1):
... | 1,854 |
def cp_dir(src_dir, dest_dir):
"""Function: cp_dir
Description: Copies a directory from source to destination.
Arguments:
(input) src_dir -> Source directory.
(input) dest_dir -> Destination directory.
(output) status -> True|False - True if copy was successful.
(output)... | 1,855 |
def listnet_loss(y_i, z_i):
"""
y_i: (n_i, 1)
z_i: (n_i, 1)
"""
P_y_i = F.softmax(y_i, dim=0)
P_z_i = F.softmax(z_i, dim=0)
return - torch.sum(y_i * torch.log(P_z_i)) | 1,856 |
def get_volume_parameters(volumes):
"""Create pipeline parameters for volumes to be mounted on pipeline steps.
Args:
volumes: a volume spec
Returns (dict): volume pipeline parameters
"""
volume_parameters = dict()
for v in volumes:
if v['type'] == 'pv':
# FIXME: How... | 1,857 |
def _process_active_tools(toolbar, tool_map, active_drag, active_inspect, active_scroll, active_tap):
""" Adds tools to the plot object
Args:
toolbar (Toolbar): instance of a Toolbar object
tools_map (dict[str]|Tool): tool_map from _process_tools_arg
active_drag (str or Tool): the tool ... | 1,858 |
def normalize(data, **kw):
"""Calculates the normalization of the given array. The normalizated
array is returned as a different array.
Args:
data The data to be normalized
Kwargs:
upper_bound The upper bound of the normalization. It has the value
of 1 by default.
lower... | 1,859 |
def relative_sse(cp_tensor, X, sum_squared_X=None):
"""Compute the relative sum of squared error for a given cp_tensor.
Parameters
----------
cp_tensor : CPTensor or tuple
TensorLy-style CPTensor object or tuple with weights as first
argument and a tuple of components as second argument... | 1,860 |
def setup_ceilometer_compute():
"""Provisions ceilometer compute services in all nodes defined in compute role."""
if env.roledefs['compute']:
execute("setup_ceilometer_compute_node", env.host_string) | 1,861 |
def set_elixier_item_status(item, status):
""" .. aendert den Status des Elixier-Beitrags """
#id = item.id_local
item.status = status
item.save() | 1,862 |
def test_enamble_stat_datatype(data):
"""
make sure, that the wron data type will rais an exception
"""
with pytest.raises(ValueError):
_ = ensemble_stat(data.values) | 1,863 |
def cc_across_time(tfx, tfy, cc_func, cc_args=()):
"""Cross correlations across time.
Args:
tfx : time-frequency domain signal 1
tfy : time-frequency domain signal 2
cc_func : cross correlation function.
cc_args : list of extra arguments of cc_func.
Returns:
... | 1,864 |
def transcribe(args, client, site_id):
"""Transcribe one or more WAV files using hermes/asr"""
from .asr import AsrStartListening, AsrStopListening, AsrTextCaptured
from .audioserver import AudioFrame
client.subscribe(AsrTextCaptured.topic())
frame_topic = AudioFrame.topic(site_id=site_id)
if ... | 1,865 |
def predict_encoding(file_path, n_lines=20):
"""Predict a file's encoding using chardet"""
import chardet
# Open the file as binary data
with open(file_path, "rb") as f:
# Join binary lines for specified number of lines
rawdata = b"".join([f.readline() for _ in range(n_lines)])
ret... | 1,866 |
def redirect_handler(url, client_id, client_secret, redirect_uri, scope):
"""
Convenience redirect handler.
Provide the redirect url (containing auth code)
along with client credentials.
Returns a spotify access token.
"""
auth = ExtendedOAuth(
client_id, client_secret, redirect_uri,... | 1,867 |
def convert_coordinate(coordinate):
"""
:param coordinate: str - a string map coordinate
:return: tuple - the string coordinate seperated into its individual components.
"""
coord = (coordinate[0], coordinate[1])
return coord | 1,868 |
def tree_falls(geo_index, shps, CHMs,savedir="."):
"""Find predictions that don't match accross years, where there is significant height drop among years
geo_index: NEON geoindex to process
shps: List of shapefiles to search
CHMs: List of canopy height models to search
"""
#Find matching shapefi... | 1,869 |
def split_multi_fasta_into_fasta(fasta_file, output_directory):
"""
Splits a single multi-FASTA-format file into individual FASTA-format files, each containing only one FASTA record.
PARAMETERS
fasta_file (str): the file location of the FASTA file
output_directory (str): the output director... | 1,870 |
def get_noun_phrases(doc: Doc) -> List[Span]:
"""Compile a list of noun phrases in sense2vec's format (without
determiners). Separated out to make it easier to customize, e.g. for
languages that don't implement a noun_chunks iterator out-of-the-box, or
use different label schemes.
doc (Doc): The Do... | 1,871 |
def load_file_from_url(url):
"""Load the data from url."""
url_path = get_absolute_url_path(url, PATH)
response = urlopen(url_path)
contents = json.loads(response.read())
return parse_file_contents(contents, url_path.endswith(".mrsys")) | 1,872 |
def speedPunisherMin(v, vmin):
"""
:param v:
:param vmin:
:return:
"""
x = fmin(v - vmin, 0)
return x ** 2 | 1,873 |
def initialize_ecr_client():
"""
Initializes the ECR CLient. If running in Lambda mode, only the AWS REGION environment variable is needed.
If not running in Lambda mode, the AWS credentials are also needed.
"""
if(os.environ.get('MODE') == 'lambda'):
ecrClient = boto3.client('ecr', region_n... | 1,874 |
def hexagonal_packing_cross_section(nseeds, Areq, insu, out_insu):
""" Make a hexagonal packing and scale the result to be Areq cross section
Parameter insu must be a percentage of the strand radius.
out_insu is the insulation thickness around the wire as meters
Returns:
(wire diameter... | 1,875 |
def bk():
"""
Returns an RGB object representing a black pixel.
This function is created to make smile() more legible.
"""
return introcs.RGB(0,0,0) | 1,876 |
def autoEpochToTime(epoch):
"""
Converts a long offset from Epoch value to a DBDateTime. This method uses expected date ranges to
infer whether the passed value is in milliseconds, microseconds, or nanoseconds. Thresholds used are
TimeConstants.MICROTIME_THRESHOLD divided by 1000 for milliseconds, as-... | 1,877 |
def _write(fname, reqs):
"""Dump requirements back to a file in sorted format."""
reqs = sorted(reqs, key=sort_key)
with open(fname, "w") as f:
for r in reqs:
f.write(f"{r}\n") | 1,878 |
def compile_recursive_descent(file_lines, *args, **kwargs):
"""Given a file and its lines, recursively compile until no ksx statements remain"""
visited_files = kwargs.get('visited_files', set())
# calculate a hash of the file_lines and check if we have already compiled
# this one
file_hash = hash_... | 1,879 |
def cl_user(client): # pylint: disable=redefined-outer-name
"""yield client authenticated to role user"""
yield client_in_roles(client, ['user']) | 1,880 |
def majority_voting(masks, voting='hard', weights=None, threshold=0.5):
"""Soft Voting/Majority Rule mask merging; Signature based upon the Scikit-learn VotingClassifier (https://github.com/scikit-learn/scikit-learn/blob/2beed55847ee70d363bdbfe14ee4401438fba057/sklearn/ensemble/_voting.py#L141)
Parameters
... | 1,881 |
def send_msg(content):
"""
发送消息
:param content: 消息内容
:return:
"""
(url, data, field) = __read_data()
if not url or not data:
print "url={0}, data={1}".format(url, data)
return
headers = {'Content-Type': 'application/json'}
json_content = json.loads(data)
json_cont... | 1,882 |
def animate(zdata,
xdata,
ydata,
conversionFactorArray,
timedata,
BoxSize,
timeSteps=100,
filename="particle"):
"""
Animates the particle's motion given the z, x and y signal (in Volts)
and the conversion factor (to convert ... | 1,883 |
def name_of_decompressed(filename):
""" Given a filename check if it is in compressed type (any of
['.Z', '.gz', '.tar.gz', '.zip']; if indeed it is compressed return the
name of the uncompressed file, else return the input filename.
"""
dct = {
'.Z': re.compile('.Z$'),
'.tar.gz... | 1,884 |
def sample_distribution(distribution):
"""Sample one element from a distribution assumed to be an array of normalized
probabilities.
"""
r = random.uniform(0, 1)
s = 0
for i in range(len(distribution)):
s += distribution[i]
if s >= r:
return i
return len(distribution) - 1 | 1,885 |
def benchmark(func):
"""Decorator to mark a benchmark."""
BENCHMARKS[func.__name__] = func
return func | 1,886 |
def write_gvecs(fp, gvecs, kpath='/electrons/kpoint_0'):
""" fill the electrons/kpoint_0/gvectors group in wf h5 file
Args:
fp (h5py.File): hdf5 file object
gvecs (np.array): PW basis as integer vectors
kpath (str, optional): kpoint group to contain gvecs, default is
'/electrons/kpoint_0'
Examp... | 1,887 |
def do_positive_DFT(data_in, tmax):
"""
Do Discrete Fourier transformation and take POSITIVE frequency component part.
Args:
data_in (array): input data.
tmax (float): sample frequency.
Returns:
data_s (array): output array with POSITIVE frequency component part.
data_w (... | 1,888 |
def test_load_extension_valid(import_path: str) -> None:
"""It loads the extension."""
extension = load_extension(import_path)
assert issubclass(extension, jinja2.ext.Extension) | 1,889 |
def scroll_down(driver):
"""Scrolling the page for pages with infinite scrolling"""
loading_thread = threading.Thread(target=loading)
loading_thread.start()
# Get scroll height.
last_height = driver.execute_script("return document.body.scrollHeight")
while True:
# Scroll down to the bott... | 1,890 |
def service(base_app, location):
"""Service fixture."""
return base_app.extensions["invenio-records-lom"].records_service | 1,891 |
def test_is_divisible_by_6(s, result):
"""Test function returns expected result."""
from divisible_by_6 import is_divisible_by_6
assert is_divisible_by_6(s) == result | 1,892 |
def check_file_content(path, expected_content):
"""Check file has expected content.
:param str path: Path to file.
:param str expected_content: Expected file content.
"""
with open(path) as input:
return expected_content == input.read() | 1,893 |
def get_arguments(deluge=False):
"""Retrieves CLI arguments from the 'addmedia' script and uses
get_parser() to validate them.
Returns the full file path to the config file in use and a dict of
validated arguments from the MHParser object.
"""
# Check for deluge
if deluge:
return g... | 1,894 |
def verify_apikey(payload,
raiseonfail=False,
override_authdb_path=None,
override_permissions_json=None,
config=None):
"""Checks if an API key is valid.
This version does not require a session.
Parameters
----------
payload :... | 1,895 |
def merge_image_data(dir_dict, output_image_file, logg):
"""
Merge image data in dir_dict.
Parameters
----------
base_dir : str base directory of dir_dict
dir_dict : dictionary containing pairs of directories and associated files
output_image_file : str output image file string
Returns... | 1,896 |
def save_model(file_name_base, model):
"""Save and convert Keras model"""
keras_file = f'{file_name_base}.h5'
fdeep_file = f'{file_name_base}.json'
print(f'Saving {keras_file}')
model.save(keras_file, include_optimizer=False)
print(f'Converting {keras_file} to {fdeep_file}.')
convert_model.c... | 1,897 |
def case_mc2us(x):
""" mixed case to underscore notation """
return case_cw2us(x) | 1,898 |
def _parse_arguments():
"""
Constructs and parses the command line arguments for eg. Returns an args
object as returned by parser.parse_args().
"""
parser = argparse.ArgumentParser(
description='eg provides examples of common command usage.'
)
parser.add_argument(
'-v',
... | 1,899 |
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