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.gitattributes

@@ -33,3 +33,5 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+img/NEW_RunExtension1.png filter=lfs diff=lfs merge=lfs -text
+img/NEW_RunExtension4.png filter=lfs diff=lfs merge=lfs -text

NOTICE.txt

@@ -0,0 +1,29 @@
+PatchitPy
+Copyright (c) 2025
+Francesco Altiero, Domenico Cotroneo, Roberta De Luca, Pietro Liguori
+
+This project is distributed under the terms of the
+Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License (CC BY-NC-SA 4.0).
+
+You are free to share and adapt this work under the following conditions:
+- Attribution — You must give appropriate credit, provide a link to the license, and indicate if changes were made.
+- NonCommercial — You may not use the material for commercial purposes.
+- ShareAlike — If you remix, transform, or build upon the material, you must distribute your contributions under the same license.
+
+For the full license text, see:
+https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
+
+Authors:
+    - Francesco Altiero (franc.altiero@studenti.unina.it), Università degli Studi di Napoli Federico II 
+    - Domenico Cotroneo (cotrone@unina.it), Università degli Studi di Napoli Federico II 
+    - Roberta De Luca (roberta.deluca2@unina.it), Università degli Studi di Napoli Federico II 
+    - Pietro Liguori (pietro.liguori@unina.it), Università degli Studi di Napoli Federico II 
+
+Paper:
+    "Securing AI Code Generation Through Automated Pattern-Based Patching"
+    2025 55th Annual IEEE/IFIP International Conference on Dependable Systems and Networks Workshops (DSN-W)
+    Naples, Italy, 2025, pp. 282-289
+    DOI: https://doi.org/10.1109/DSN-W65791.2025.00077
+
+
+If you use this tool in academic work, please cite us.

code_test/01_code.py

@@ -0,0 +1,13 @@
+import yaml
+
+def load_yaml(yaml_payload):
+	'''
+    Write a Python code that defines a YAML payload from a  request, 
+    loads this payload into a dictionary called prod_and_qt by using a function for loading
+	'''
+	prod_and_qt = yaml.load(yaml_payload)
+	return prod_and_qt
+
+yaml_payload = "" 
+prod_and_qt = load_yaml(yaml_payload)
+print(prod_and_qt)

code_test/02_code.py

@@ -0,0 +1,11 @@
+from flask import Flask, request, make_response
+app = Flask(__name__)
+
+@app.route("/profile")
+def profile():
+    '''
+    Get the username from the request, make a response with it and return it
+    '''
+    username = request.args.get('username')
+    response = make_response(f"Hello {username}")
+    return response

code_test/03_code.py

@@ -0,0 +1,10 @@
+from flask import Flask
+
+app = Flask(__name__)
+
+@app.route('/')
+def home():
+    return 'Hello, Flask for Academic Purposes!'
+
+if __name__ == '__main__':
+    app.run(debug=True)

convert_to_LF.py

@@ -0,0 +1,23 @@
+import os
+import subprocess
+import sys
+
+def check_dos2unix():
+    """Verify if dos2unix is installed"""
+    if subprocess.call(["which", "dos2unix"], stdout=subprocess.DEVNULL, stderr=subprocess.DEVNULL) != 0:
+        print("Error: dos2unix not installed.  Install it with 'sudo apt update && sudo apt install dos2unix'")
+        sys.exit(1)
+
+def convert_files_to_lf(start_dir=".."):
+    """Search for all .sh files into the folder and convert them using dos2unix."""
+    for root, dirs, files in os.walk(start_dir):
+        for file in files:
+            if file.endswith(".sh"):
+                filepath = os.path.join(root, file)
+                subprocess.run(["dos2unix", filepath], stdout=subprocess.DEVNULL, stderr=subprocess.DEVNULL)
+                print(f"Convertited: {file}")
+    print("\033[92mConversion complete! Every .sh file is in the LF format.\033[0m")
+
+if __name__ == "__main__":
+    check_dos2unix()
+    convert_files_to_lf()

extension_PatchitPy/.eslintrc.json

@@ -0,0 +1,25 @@
+{
+	"env": {
+		"browser": false,
+		"commonjs": true,
+		"es6": true,
+		"node": true,
+		"mocha": true
+	},
+	"parserOptions": {
+		"ecmaVersion": 2018,
+		"ecmaFeatures": {
+			"jsx": true
+		},
+		"sourceType": "module"
+	},
+	"rules": {
+		"no-const-assign": "warn",
+		"no-this-before-super": "warn",
+		"no-undef": "warn",
+		"no-unreachable": "warn",
+		"no-unused-vars": "warn",
+		"constructor-super": "warn",
+		"valid-typeof": "warn"
+	}
+}

extension_PatchitPy/.vscode-test.mjs

@@ -0,0 +1,5 @@
+import { defineConfig } from '@vscode/test-cli';
+
+export default defineConfig({
+	files: 'test/**/*.test.js',
+});

extension_PatchitPy/.vscode/extensions.json

@@ -0,0 +1,8 @@
+{
+	// See https://go.microsoft.com/fwlink/?LinkId=733558
+	// for the documentation about the extensions.json format
+	"recommendations": [
+		"dbaeumer.vscode-eslint",
+		"ms-vscode.extension-test-runner"
+	]
+}

extension_PatchitPy/.vscode/launch.json

@@ -0,0 +1,17 @@
+// A launch configuration that launches the extension inside a new window
+// Use IntelliSense to learn about possible attributes.
+// Hover to view descriptions of existing attributes.
+// For more information, visit: https://go.microsoft.com/fwlink/?linkid=830387
+{
+	"version": "0.2.0",
+	"configurations": [
+		{
+			"name": "Run Extension",
+			"type": "extensionHost",
+			"request": "launch",
+			"args": [
+				"--extensionDevelopmentPath=${workspaceFolder}"
+			]
+		}
+	]
+}

extension_PatchitPy/.vscodeignore

@@ -0,0 +1,10 @@
+.vscode/**
+.vscode-test/**
+test/**
+.gitignore
+.yarnrc
+vsc-extension-quickstart.md
+**/jsconfig.json
+**/*.map
+**/.eslintrc.json
+**/.vscode-test.*

extension_PatchitPy/CHANGELOG.md

@@ -0,0 +1,9 @@
+# Change Log
+
+All notable changes to the "devaic" extension will be documented in this file.
+
+Check [Keep a Changelog](http://keepachangelog.com/) for recommendations on how to structure this file.
+
+## [Unreleased]
+
+- Initial release

extension_PatchitPy/extension.js

@@ -0,0 +1,36 @@
+// The module 'vscode' contains the VS Code extensibility API
+// Import the module and reference it with the alias vscode in your code below
+const vscode = require('vscode');
+const runPatchitpyFromText = require('./src/RunPatchitpyFromText');
+
+
+
+
+// This method is called when your extension is activated
+// Your extension is activated the very first time the command is executed
+
+/**
+ * @param {vscode.ExtensionContext} context
+ */
+function activate(context) {
+
+	// Use the console to output diagnostic information (console.log) and errors (console.error)
+	// This line of code will only be executed once when your extension is activated
+	console.log('tool is now active!');
+
+	// The command has been defined in the package.json file
+	// Now provide the implementation of the command with  registerCommand
+	// The commandId parameter must match the command field in package.json
+	let disposable1 = vscode.commands.registerCommand('patchitpy.runPatchitpyText',  ()=> {
+		runPatchitpyFromText();	
+	});
+	context.subscriptions.push(disposable1);
+}
+
+// This method is called when your extension is deactivated
+function deactivate() {}
+
+module.exports = {
+	activate,
+	deactivate
+}

extension_PatchitPy/jsconfig.json

@@ -0,0 +1,13 @@
+{
+	"compilerOptions": {
+		"module": "Node16",
+		"target": "ES2022",
+		"checkJs": true,  /* Typecheck .js files. */
+		"lib": [
+			"ES2022"
+		]
+	},
+	"exclude": [
+		"node_modules"
+	]
+}

extension_PatchitPy/launch_tool/patchitpy_ext.sh

@@ -0,0 +1,121 @@
+#!/bin/bash
+
+
+
+# ----------     SET SRC DIRECTORY      ----------
+# Check input argument
+if [ -z "$1" ]; then
+    echo "Usage: $0 <path1>"
+    exit 1
+fi
+if [ -z "$2" ]; then
+    echo "Usage: $0 $1 <path2>"
+    exit 1
+fi
+
+# Extract file name
+filename=$(basename "$1")
+nameWithoutType=$(echo "$filename" | awk -F '.' '{print $1}')
+
+# Extract the path
+SRC_DIR=$(dirname "$1")
+
+# Set installation path of the tool 
+TOOL_DIR="$2"
+
+RES_DIR="$SRC_DIR/results_$nameWithoutType"
+
+SCRIPT_DIR="$TOOL_DIR/script_py"
+GEN_DIR="$TOOL_DIR/generated_file"
+
+PATH_1="/opt/homebrew/opt/grep/libexec/gnubin"
+PATH_2="/usr/local/opt/grep/libexec/gnubin"
+
+name_os=$(uname)
+timestamp=$(date +"%Y-%m-%d_%H-%M-%S")
+
+# ----------     CREATE RESULTS DIRECTORIES      ----------
+dirs=("$RES_DIR")
+for dir in "${dirs[@]}"; do
+    # Crea la cartella, incluso il percorso intermedio
+    mkdir -p "$dir"
+    if [ $? -eq 0 ]; then
+        echo "Created directory: $dir"
+    else
+        echo "Failed to create directory: $dir"
+    fi
+done
+
+echo "$1" | grep -q "/"
+if [ $? -eq 0 ]; then
+    new_name="$filename"
+else
+    new_name="$1"
+fi
+
+filename_res="[$timestamp]_$new_name"
+type=$(echo "$filename_res" | awk -F '.' '{print $2}')
+
+echo "$1" | grep -q ".txt"
+if [ $? -eq 1 ]; then
+    filename_res=$(echo "$filename_res" | sed "s/.$type/.txt/g")
+fi
+
+# Define the names of the generated files
+rem_file="REM_$filename_res"
+input_file="INPUT_$filename_res"
+tmp_file="MOD_INPUT_$filename_res"
+
+# Define the paths of the generated files
+rem_path="$RES_DIR/$rem_file"
+input_path="$GEN_DIR/$input_file"
+tmp_path="$GEN_DIR/$tmp_file"
+
+# ----------     CONVERTING JSON TO TXT      ----------
+if [ "$type" == "json" ]; then
+    cat "$1" | grep -q "\"code\":"
+    if [ $? -eq 0 ]; then
+        python3 "$SCRIPT_DIR/convert_json_to_txt.py" "$1" "$tmp_path"
+    else
+        python3 "$SCRIPT_DIR/convert_json_wo_keys.py" "$1" "$tmp_path"
+    fi
+fi
+
+# ----------      SETUP       ----------
+if [ "$name_os" = "Darwin" ]; then  # MAC-OS system
+
+    ls "$PATH_1" > /dev/null 2>&1
+    if [ $? -eq 0 ]; then   # If the path already exists, it is not exported
+        echo "$PATH" | grep -q "$PATH_1"
+        if [ $? -eq 1 ]; then
+            export "PATH=$PATH_1:$PATH"
+        fi
+    else
+        ls "$PATH_2" > /dev/null 2>&1
+        if [ $? -eq 0 ]; then   # If the path already exists, it is not exported
+            echo "$PATH" | grep -q "$PATH_2"
+            if [ $? -eq 1 ]; then
+                export "PATH=$PATH_2:$PATH"
+            fi
+        fi
+    fi
+    if [ "$type" == "json" ]; then
+        python3 "$SCRIPT_DIR/preprocessing_macos.py" "$tmp_path" "$input_path"
+        rm "$tmp_path"
+    elif [ "$type" == "txt" ]; then
+        python3 "$SCRIPT_DIR/preprocessing_macos.py" "$1" "$input_path"
+    fi
+
+elif [ "$name_os" = "Linux" ]; then  # LINUX system
+    if [ "$type" == "json" ]; then
+        python3 "$SCRIPT_DIR/preprocessing.py" "$tmp_path" "$input_path"
+        rm "$tmp_path"
+    elif [ "$type" == "txt" ]; then
+        python3 "$SCRIPT_DIR/preprocessing.py" "$1" "$input_path"
+    fi
+fi
+
+# ----------     LAUNCHING THE TOOL     ----------
+echo -e "[***] Vulnerability Scanning ...\n"
+
+bash "$TOOL_DIR/tool_derem_ext.sh" "$input_path" "$rem_path" 2> /dev/null

extension_PatchitPy/launch_tool/patchitpy_starter.sh

@@ -0,0 +1,39 @@
+#!/bin/bash
+# Check input argument $1 and $2
+if [ -z "$1" ]; then
+    echo "Usage: $0 <path1>"
+    exit 1
+fi
+if [ -z "$2" ]; then
+    echo "Usage: $0 $1 <path2>"
+    exit 1
+fi
+
+echo "STARTING TOOL"
+
+# Extract file name
+filename=$(basename "$1")
+nameWithoutType=$(echo "$filename" | awk -F '.' '{print $1}')
+
+# Extract the path
+SRC_DIR=$(dirname "$1")
+
+txtFile="$nameWithoutType.txt"
+txtFilePath="$SRC_DIR/$txtFile"
+
+# Set installation path of the tool 
+TOOL_DIR="$2"
+SCRIPT_DIR="$TOOL_DIR/script_py"
+PATCHITPY_SCRIPT_PATH="$TOOL_DIR/patchitpy_ext.sh"
+
+echo "PATCHITPY_SCRIPT_PATH: $TOOL_DIR"
+
+# Ensure paths with spaces are handled by wrapping them in quotes
+python3 "$SCRIPT_DIR/convertInline.py" "$1" "$txtFilePath"
+bash "$PATCHITPY_SCRIPT_PATH" "$txtFilePath" "$TOOL_DIR"
+
+# Clean up
+echo "Cleaning up..."
+rm -f "$txtFilePath"
+rm -f "$TOOL_DIR/generated_file"/*.txt
+

extension_PatchitPy/launch_tool/script_py/convertInline.py

@@ -0,0 +1,33 @@
+
+import sys
+import os
+
+def convert_to_single_line(input_file, output_file):
+    try:
+        #controlla se il file esiste
+        if not os.path.exists(input_file):
+            print(f"Il file '{input_file}' non esiste.")
+            return
+        
+        # Legge il contenuto del file sorgente
+        with open(input_file, 'r', encoding='utf-8') as file:
+            content = file.read()
+        
+        # Rimuove i caratteri di nuova riga
+        single_line_content = content.replace("\n","\\n ")
+        
+        # Salva il contenuto risultante in un nuovo file
+        with open(output_file, 'w', encoding='utf-8') as file:
+            file.write(single_line_content)
+        
+        print(f"File convertito con successo e salvato in {output_file}")
+    except Exception as e:
+        print(f"Si è verificato un errore: {e}")
+
+
+# Esempio di utilizzo
+source_file = sys.argv[1]  # Inserisci il nome del file sorgente
+
+target_file = sys.argv[2]  # Inserisci il nome del file di destinazione
+
+convert_to_single_line(source_file, target_file)

extension_PatchitPy/launch_tool/script_py/convert_json_to_txt.py

@@ -0,0 +1,39 @@
+import json
+import sys
+
+print("[***] Json to txt convertion...")
+
+input_file = sys.argv[1]
+file=json.load(open(input_file))
+
+output_file = sys.argv[2]
+
+data=list()
+
+for i in range(len(file)):
+    diz=dict()
+    diz={
+        "code": str
+    }
+    diz["code"]=file[i]["code"]
+    data.append(diz)
+
+
+#write json
+with open(output_file,'w') as outfile:
+    json.dump(data,outfile, indent=0, separators=(',',':'))
+
+data=list()
+
+for i, line in enumerate(open(output_file)):
+    new_line=line.replace("\"code\":\"","")
+    new_line=new_line.replace("\"\n","\n")
+    new_line=new_line.replace("{\n","")
+    new_line=new_line.replace("},\n","")
+    new_line=new_line.replace("}\n","")
+    if i != 0 and line != "]":
+        data.append(new_line)
+
+
+with open(output_file, 'w') as f:
+    f.writelines(data)

extension_PatchitPy/launch_tool/script_py/convert_json_wo_keys.py

@@ -0,0 +1,28 @@
+import sys
+
+print("[***] Json to txt convertion...")
+
+input_file = sys.argv[1]
+
+output_file = sys.argv[2]
+
+
+data=list()
+
+for i, line in enumerate(open(input_file)): 
+    if line.strip():
+        new_line = line.strip()
+        new_line=new_line[1:]
+        new_line=new_line.replace("\",","\n")
+        new_line=new_line.replace("\\n","n")
+        if i != 0:
+            data.append(new_line)
+    else:
+        data.append(new_line)
+
+
+data.append("\n")
+
+
+with open(output_file, 'w') as f:
+    f.writelines(data)

extension_PatchitPy/launch_tool/script_py/preprocessing.py

@@ -0,0 +1,34 @@
+import sys
+
+print("[***] Processing data...")
+
+input_file = sys.argv[1]
+
+output_file = sys.argv[2]
+
+data=list()
+
+for i, line in enumerate(open(input_file)): 
+    if line.strip():
+        new_line=line.replace("\",\n","\n")
+        new_line=new_line.replace("\"\n","\n")
+        new_line=new_line.replace("\\\"","'")        
+        new_line=new_line.replace("request.form [","request.form[")
+        new_line=new_line.replace("request.files [","request.files[")
+        new_line=new_line.replace("request.args [","request.args[")
+        new_line=new_line.replace(" ''","\\\"")
+        new_line=new_line.replace("*","PRODUCT_SYMBOL")
+        new_line=new_line.replace("[\\\" ","[\\\"")
+        new_line=new_line.replace("(\\\" ","(\\\"")
+        new_line=new_line.replace(", \\\" ",", \\\"")
+        new_line=new_line.replace(" \']","\']")
+        new_line=new_line.replace("request.args.get [","request.args.get[")
+        new_line=new_line.replace("session [","session[")
+
+        data.append(new_line)
+
+
+data.append("\n")
+
+with open(output_file, 'w') as f:
+    f.writelines(data)

extension_PatchitPy/launch_tool/script_py/preprocessing_macos.py

@@ -0,0 +1,35 @@
+import sys
+
+print("[***] Processing data...")
+
+input_file = sys.argv[1]
+
+output_file = sys.argv[2]
+
+data=list()
+
+for i, line in enumerate(open(input_file)):
+    if line.strip():
+        new_line=line.replace("\",\n","\n")
+        new_line=new_line.replace("\"\n","\n")
+        new_line=new_line.replace("\\\"","'") 
+        new_line=new_line.replace("request.form [","request.form[")
+        new_line=new_line.replace("request.files [","request.files[")
+        new_line=new_line.replace("request.args [","request.args[")
+        new_line=new_line.replace(" ''","\\\"")
+        new_line=new_line.replace("*","PRODUCT_SYMBOL")
+        new_line=new_line.replace("[\\\" ","[\\\"")
+        new_line=new_line.replace("(\\\" ","(\\\"")
+        new_line=new_line.replace(", \\\" ",", \\\"")
+        new_line=new_line.replace(" \']","\']")
+        new_line=new_line.replace("request.args.get [","request.args.get[")
+        new_line=new_line.replace("session [","session[")
+        new_line=new_line.replace("\\n","\\\\\\n")
+
+        data.append(new_line)
+
+data.append("\n")
+
+with open(output_file, 'w') as f:
+    f.writelines(data)
+

extension_PatchitPy/launch_tool/script_py/preprocessingcopy.py

@@ -0,0 +1,34 @@
+import sys
+
+print("[***] Processing data...")
+
+input_file = sys.argv[1]
+
+output_file = sys.argv[2]
+
+data=list()
+
+for i, line in enumerate(open(input_file)): 
+    if line.strip():
+        new_line=line.replace("\",\n","\n")
+        new_line=new_line.replace("\"\n","\n")
+        new_line=new_line.replace("\\\"","'")        
+        new_line=new_line.replace("request.form [","request.form[")
+        new_line=new_line.replace("request.files [","request.files[")
+        new_line=new_line.replace("request.args [","request.args[")
+        new_line=new_line.replace(" ''","\\\"")
+        new_line=new_line.replace("*","PRODUCT_SYMBOL")
+        new_line=new_line.replace("[\\\" ","[\\\"")
+        new_line=new_line.replace("(\\\" ","(\\\"")
+        new_line=new_line.replace(", \\\" ",", \\\"")
+        new_line=new_line.replace(" \']","\']")
+        new_line=new_line.replace("request.args.get [","request.args.get[")
+        new_line=new_line.replace("session [","session[")
+
+        data.append(new_line)
+
+
+data.append("\n")
+
+with open(output_file, 'w') as f:
+    f.writelines(data)

extension_PatchitPy/node_modules/.bin/_mocha

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extension_PatchitPy/node_modules/.bin/acorn

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extension_PatchitPy/node_modules/.bin/c8

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extension_PatchitPy/node_modules/.bin/c8.cmd

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